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well...In Reloaded How did Smith get in to the pathway of the programmer doors.. since he doesn't have the key(s).

I'm thinking he has access to where ever...since he was once an agent...now he's free. He was supposed to go back to the source, but he didnt. So i am guessing he can go wherever he likes...

im thinking he used a cookie

yes, yes, bloody cookies...

He is in them in the 1st movie:

"They are the gatekeepers, they are guarding all the doors and holding all the keys..."

I'm still sticking with the cookie-theory...

He is actually in them during the first movie though (Interrogation scene with Neo - when it shows Archie's monitors, look at the corridor and colour of the door they are entering through.

But Cookie-Theory - I will keep saying it, I feel they are actually VERY important

I'll check it later on tonight.

"Loop" train is also in the first movie

Also:

"They can move in an out of any software still hardwired to the system..."