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Who do you thing he is referring to when he is talking about his employer???

Ra's no question.

Ra's ....
who else??

It was Ra of course

How can you be so sure?

Because Scarecrow was dumping his toxin into the water. Ra's people stole what they needed to have that toxin be put into the air. 1+1=2

Scarecrow was only a pawn of a more sinister plan to poison the Gotham water supply. I won't speculate but read Year One and you mind find clues.

Joker Fish anyone?

Ra's, there's nothing to debate. Now, if by some chance the very highly unlikely happened that Ra's had an employer, it would be Lex, not The Joker

Originally posted by WindDancer
Scarecrow was only a pawn of a more sinister plan to poison the Gotham water supply. I won't speculate but read Year One and you mind find clues.

Joker Fish anyone?

Impossible, the Joker hadn't even been dumped into the vat of toxic waste yet so in retrospect he wasn't necessarily the Joker yet.

Scarecrow was working for Ra's bottom line, nothing more nothing less.

"He's coming to Gotham?"

Joker already resides here. Ra's doesn't.

But watch the movie, and you'll actually hear Batman and Ras talk briefly about how Scarecrow was working for Ras, but thought they were going to take the city hostage.

Exactly,

"henri ducard" mentions in the movie the little blue flower was sent to gotham to crane so he could make/synthesize his toxin. clearly it was ras (or whatever his name is).

Ummmmm Ra's said in the movie that Crane was working for him.

Seriously you'd have to be deaf or stupid to have missed that.