Yea Spiderman and Logan basically break down like this.
Spiderman = Faster, stronger, smarter
Logan = Tougher/more durable, more skilled, more experienced
In base abilities Peter is just superior to Logan but Logan's healing, unbreakable bones and years of experience and martial arts training balance it out so Peter can't really do allot more than keep holding him back. Of course its the same with Logan not really being able to surpass Peter's strength, speed and much faster reaction time due to his spider sense. If Peter would just take the time to learn some serious martial arts skill form Matt or someone Wolverine would be far less of a problem for him. As well would several to most, if not all, of his own rogues gallery.
Prior to OMD Peter had finally gained well more than enough edge to take Logan, at least temporally, but was still stuck at stalemate to him simply because unless he's willing to kill Logan he won't be able to stop him. Just keep holding him off, and we all know Peter isn't willing to do that even to an enemy much less Logan. Since OMD I think he's back to just his classic levels which still allow him enough of an edge to hold Logan off but not by allot. He'd have to work for it now.
But then again that's just my speculation based on what I've seen in previews and such, seeing as I still refuse to read Spiderman titles as of BND until that is fixed.