My goodness, Wolverine's overrated! Doom would beat him down. HARD. He went head to head with the Thing with no prep or weapons, and was beating Ben(the fight was cut short).
He's done it 3 times. Once in FF(ripped open his face), once in Wolverine EOTS(impaled through the shoulder and at Wolvy's mercy), and once in the Ultimate FF/X-Men crossover.(Floored with a single kick and held at claw point)
wolverine is good.. very good at beating people in a close h2h combat.. but facing doom (8 inch forcefield) and mind swap technique and high tech weapons inside his sleeves... how can a guy w/ unbreakable scissors in his hand deal w/ a guy w/ a plasma cannon able to vaporized you w/ in a milliseconds.. or a force field that can take a shot at galactus... no adamantium crap coz admantium is very taught but wouldn't do anything its in galactus' level.. dr.doom.. vaporized that crazy guy w/ some unbreakable scissors in his hands
Well, it is Doom's character to use tech or whatever magical thing he can get his hands on, so he probably would have something on him than his hands. So with that, Doom would probably win.