Batman hands out kryptonite knuckledusters to the team and flash proceeds to beat him into nothingness. I have to say I'm shocked that most people here haven't considered that batman has countermeasures in place should any hero go rogue and it's a safe bet that Supes is probably top 5-6 in the league he worries about going rogue due to raw power.
If it's a precise "they're all evil and i have to stop them without hurting them" thing, then yes, he definitely has the tools to take them all down. Barry and Bruce are the ones i'd really worry about, though.
Then again, Kal would no doubt know that too, and would target them first.
While he CAN win, and is more than capable of doing so, it's not as likely as the team beating him, imo.
Superman losing to batman, in any way is just the writers riding Bat's.
In one series, Desaad took control of Superman, and he made him fight Batman. In one stike, Batman had his whole ribcage broken multiple times, and the only reason he survived was because of plot.
Plot in the form of Orion's wife saving his ass, and the fact through Batman, the writers said that because Superman was being mind control, he was actually weaker.
Actually the mind controls were completely different.
When Max took control, Superman still had a mind to save, but when Desaad took control Superman had no mind to save, it was said nothing was able to reverse it.
The only reason the mind control was destroyed, was because Desaad trap Superman inside the Source itself, and Highfather told Superman it was destroyed because he was in the Source.
Batman is a non-factor I'm afraid. With some prep it's a different story, but I think Supes knows to take him out first. Batman won't even have time to react (unless saved by Barry)
While Superman can take this going all out I think he loses the majority. WW, Flash, GL and MM are all comparable in some ways and work together to take him down.