Well, Loa phases through matter and energy... So I really don't see a thunderclap working. I don't think the team could really do the damage to her that she can do to them. Tagging Spiderman and Wolverine, though, would be pretty damn difficult for her - not that she's horrible in combat these days.
Yes, she has destroyed beings with powerful regenerative abilities before. And she can easily disintegrate stuff with Hulk-level durability (in fact, I don't think any limit to her ability has been established yet).
I don't think she can phase through energy, at least not all forms of it. For example, Dr. Doom's force field stopped her attack quite easily. That said, a thunderclap "only" produces a strong shock wave made of air and air is just a gaseous form of matter. Loa should be able to phase through that without problems. In a confined space a thunderclap would more likely disorientate or take out the team members instead of Loa.
I would say Loa wins this match. Her power set doesn't leave much chance to opponents with only physical attacks.