It would maike a lot more sense if it actually was another Matrix but you can't actually prove it the one way or the other so its a nice theory but not worth argueing since there is no right or wrong answer (since it is a film in the first place anyway)
Oh by the way Existenz is a lot more interesting. And it hast to do with a matrix in a matrix which possibly is in a matrix that is in a matrix its cooooool. They don'T call it Matrix though.
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Matrixism?
I'D say Matrix has some ExistenZialism in it. And don't say the Matrix was first, whatever they well they traveled to the future and then stole the ideas, yes, thats how it was, err I mean is going to be, no has been, I dunno.
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1) He only stopped the sentinels AFTER he went to Architect. as was mentioned before. ( And i firmly beleive he did NOT go to the source, i can explain later)
2) How come trinity didnt get hit by the sentinel? she was sitting right next to neo. Neo didnt get hit by a physical sentinel, rather, he was smacked by that funky unexplained orange light crap.
3)Zion is the last city which hasnt been overrun by machines. the machines didnt make it, the surviving humans did. The freed ones are not 'bugs', they just dont accept the matrix as real. Zion isnt under control by the machines or they would have destroyed it by now.
The first Matrix explained everything quite neatly, then Reloaded screwed everyone over, then Revolutions didnt answer anything that Reloaded questioned.
Morpheus's explaination when he first introduces Neo to the Real world (when he shows him the battery) answers everything nicely.
Gender: Unspecified Location: With Cinderella and the 9 Dwarves
Yes it does it nicely but not fuilly. Zion could be a faked world, another matrix that let the humans belive they were in the free world with all the shite around. Quite possible
the agents arn't looking for zion they already know where it is smith is looking for the codes to get him into the zion mainframe so he can destroy it and be free from the matrix and not chase hackers all day