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From AvalonW

Lets see,Ninja has super human strength,agility,that sword among other things.Wolverine has a healing factor,animal like senses,adamantium claws and bones.oh,and the undying love from million s of fanboys..sure wish the Ninja luck in this one

right now i think cyber ninja is cooler. ill modify my vote if anyone give me proof that wolvie could beat a matrix ninja

GRAY FOX will make spaghetti out of wolverine even before his healing factor or reflexes kick in.