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I put Superman in a fight against The Starship Enterprise haha I know but I gave the team on the enterprise prep 5 hours combined with the computer and data processing speed. In this fight Batman Nightwing & Batgirl has been assimialated and Superman is out to save them he is detected and they prepare for confrontation.
The USS Enterprise NCC-1701-E vs Superman
http://www.killermovies.com/forums/showthread.php?s=&threadid=388805&highlight=Star+Trek+Enterprise+forumid%3A77

Borg Cube- http://memory-alpha.org/en/wiki/Borg_cube

If the Borg have Batman then they know his weaknesses and can easily replicate the radioactive frequencies that would weaken and kill him.

Resistance is futile.

Kal EL of Borg A flying Borg but would they be able to adapt him with his healing factor?

If they can replicate the radiation of kryptonite, then yeah.