well when smith said... "I remember chasing you is like chasing a ghost."
Seraph used those doors to travel between different places so it would be very hard to catch him i guess?
It's possible..if the whole Matrix had been transformed in Smithland...But I don't think so...The contamination was not 100 % complete in my point of view...
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in my opinion, smith assimilate everybody in the matrix.
seraph, twins, satii, oracle (we seen it), agents, included the ghost's programs (he said: "I remember chasing you is like chasing a ghost")
he also tried to assimilate Neo... and he was deleted.
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When Smith get deleted at the end of Revolutions, you see ALL the Smith's getting deleted...and it shows what would probably be every single person. I think they 100% assimilated everyone in the Matrix...Smith was really that determined to kill Neo.
how COULD he get the twins, they would just ghost as soon as smith touches them
also, if he DID get the twins, there would be at least 2 smiths that could ghost/phase and we would have probably seen this at some point
The Matrix was not 100 % contaminated! And the people at The Hell Club? And Merv? And Perse? Merv knew that Smith was a menace...He is smart enough to avoid him....