Yeah Sifer I agree with you. The story kinda revolves around their connection ergo (vis a vis concordantly) their fight will be the climax. But I think that at the same time the war in Zion will be going on. Ya know kinda like a star wars flick three different battles all the climax.
*uses noodle with tomato sauce and chicken parmeasan*
Not only that, but is that ..."THE" Helicopter scene we've been hearing about? Or is that just a Hovercraft?
And I think his blindness is only temporary before he dies.
Because he's probably still within the Matrix, and at the same time still able to control his body in the Real world, just he can't use both set's of eye. While he's running around the real world, he's probably meditating in the matrix.