The mirror is basically a part of the matrix just like the room they are in and the bodies they are using. Neo and the people surrounding him are not in the same physical location, ergo the tracer. Since the red pill is interupting his signals to and from the matrix which is his brain signals recieving and sending input to the Matrix, his distortion of it bends and warps, similar to the corruption of a computer program or image. The difference is that he is alive and his panic engenders a crash in the interaction he is getting from the matrix. This will result in either his death by cardiac arrest or initial release if they find him. deeeeeeeeeep.