read this "the matrix explained" this was written sometime after reloaded and ALOT of good theories are within it.
Zion is a program, just like the Matrix.
How is Neo able to figure out that he is able to stop the sentinels in
Zion near the end of the film? The spoon given to him earlier. It had
obviously been bent loads, but how outside the Matrix?? This gave Neo
the inspiration and the understanding that Zion is still a matrix.
The One explained
"The One" is a program, but has to be "attached" to someone in the
Matrix. So Mr. Anderson got it in the 6th version of the Matrix. Then
"The One" program's purpose is to allow Zion to be destroyed then to
rebuild it. The reason for this is because of anomalies - the 1% of
humans that don't accept the Matrix. These are all brought out of the
Matrix program and into the Zion program by the "Morpheus" program and
other similar "ship captain" programs. Then once all the anomalies are
out of the Matrix (and in Zion), that is the time for Zion to be
destroyed, thus killing all the anomalies off.
The Matrix is then upgraded, thus creating the next version of the
Matrix, but Zion must be rebuilt so that the next lot of anomalies can
be brought out again so that they can be destroyed. This is the
feedback-loop, and is the reason to retain a handful of people so t! hat
Zion can be rebuilt. So this is why Neo said the prophecy was a lie -
the One's purpose was not to end the war as the prophecy stated.
Unfortunately, "The One" program must be re-used each time, or copied,
so it can be "attached" to a new anomaly inside the Matrix.
So what happens to the old "The One" program? It faces deletion, and as
the Oracle explained, it goes into exile instead, just like the French
bloke (the Merovingian) did. He was the first One (probably from the
second version of the Matrix), and once he fulfilled his duty, he
became an exile program and "abdicated" his "Oneness" by choosing
Persephone and power. This is evident in the bogs when Persephone asks
Neo to kiss her. She says she wants him to kiss her so she can feel what
it is like again to be kissed by something close to human, just like the
Merovingian used to be. Then she says to Trinity that she envies her,
but that these things are not meant to last. So the Merovingian used
to be just like Neo - a One - thus proving further the feedback-loop
explained earlier.
The correct door in the Architect's room:
Now there are two possibilities here:
1. All the previous One's chose the right door allowing a "temporary
dissemination" of their code into the Matrix (i.e., the code they
"carry" thus indicating Neo is indeed human), then he must select
(unplug) 23 people from the Matrix to rebuild Zion. This takes away the
possibility that stories from previous rebuilds of Zion will be carried
through.
But Morpheus indicated in the first Matrix that this is the
case anyway. He said, "there was a man born inside, able to change
things, it was he who freed the first of us," - basically the One
previous to Neo. And this proves that the previous One chose the right
door also. Neo's purpose is also to choose the right door, but he does
not because he faces deletion afterwards and has the c! hoice of going
into exile - programs choosing to go into exile is the one thing that
can't be accounted for in program parameters. Thus, he chooses the left
door instead this time. How was Neo able to choose the other door?
Because of his extreme willpower? - Even the Architect indicated that
he'd noticed this - "Interesting. That was quicker than the others." Or
more likely, because the Oracle upgraded his coding with the candy on
the park bench. The candy/cookie was a method to change the One's
program. She said he has made a believer out of her - this is quite
human-like and perhaps the previous One's didn't accept the upgrade
candy, now she has hope... hope that Neo will finally choose the other
door.
2. All the previous One's chose the left door, saving Trinity and
letting Zion fall. So this time is no different. But the Architect does
say, "You are here because Zion is about to be destroyed. Its every
living inhabitant terminate! d, its entire existence eradicated," and
also, "this will be the sixth time we have destroyed it, and we have
become exceedingly efficient at it," - assuming the Architect isn't
lying, then they have already destroyed Zion (i.e., Zion has fallen)
five times - i.e., the result of going through the left door. Morpheus
and Trinity are programs. Morpheus's purpose was to find the One and
deliver him to the Architect. Trinity's purpose is to control the One by
getting in love with him. Trinity is supposed to be the mother of the
new One every time the Matrix is Reloaded. That's why the sex scene was
so important and why she was named Trinity. The Architect says, "she is
going to die, and there is nothing that you can do to stop it." He was
correct though because she did die just like Neo did in the first
Matrix (Oracle said he or Morpheus would, and she didn't lie, but he
came back to life). Trinity dies, but comes back to lif! e (we are using
medical definition of death in all this of course!).
The Architect has already laid down an ultimatum for Neo choosing the
left door: The Architect - "Failure to comply with this process will
result in a cataclysmic system crash killing everyone connected to the
matrix, which coupled with the extermination of Zion will ultimately
result in the extinction of the entire human race." Neo - "You won't let
it happen, you can't. You need human beings to survive."
The Architect - "There are levels of survival we are prepared to accept.
However, the relevant issue is whether or not you are ready to accept
the responsibility for the death of every human being in this world."
Looking at this further, the Architect does say "coupled" with the
extermination of Zion will the human race be exterminated. So he says
everyone connected to the Matrix will die, but if Zion is not
exterminated, the human race will not necessarily! die. Also, there is
likely to be a time-window between not going through the right door, and
the cataclysmic crash, thus allowing Neo to unplug as many as possible
from the Matrix, then tho
se people won't die. This will be the start of
the next Zion. As for the Matrix, a cataclysmic crash doesn't mean the
end of the Matrix - just needs rebooting or reloading!
Agent Smith explained
Agent Smith is the only "human" in this world. He's the one spreading
himself like a virus replicating himself over and over until the Matrix
will finally get overloaded and fail. Smith is the one who wants to get
out of the Matrix for good. He said so in the first Matrix, "I must get
out of here, I must get free! And in this mind, is the key," squeezing
Morpheus's temples, "my key! Once Zion is destroyed, there is no need
for me to be here!" Smith knows that by killing Neo he can escape the
Matrix because Neo is the key to resetting the Matri! x, or to shut it
off. It was originally killing Neo (in the first Matrix) that allowed
Smith to become powerful (cloning ability) - so killing Neo again will
allow him to gain Neo's powers completely, and thus gain the power to
shut down the Matrix. So where the hell did Smith come from if he wants
to destroy the Matrix?
He's obviously not meant to be there - he's a computer virus as he has
every characteristic of a virus - he multiplies and spreads and infects
(and emulates) other programs like one. He is exactly as he described
humans at the end of the first Matrix - "You move to an area and you
multiply and multiply until every natural resource is consumed and the
only way you can survive is to spread to another area. There is another
organism on this planet that follows the same pattern. Do you know what
it is? A
virus." But who put him there? This will only be revealed in
Revolutions (Revelations?) I guess - but I! 'm betting on humans in the
real real world, i.e., outside of Zion and the Matrix. They're at war
with the machines and trying to destroy them by infecting them with this
virus - Agent Smith. So the irony with this theory is that Agent Smith
represents the human race!! Neo represents the machines! Agent Smith
says to Neo just after he's seen the Oracle that he became free when Neo
destroyed him in the first Matrix (remember when Neo entered his body
and exploded him from inside out) - as a virus, Smith has the ability to
"inherit" other programs' abilities and thus inherited some of Neo's.