read between the lines
i was just thinking about all the negative press that revolutions received, it seems to me that some of them just didn't get it. i was thinking of the final battle between smith and neo as armageddon, then the end is just Revelations chapter 21 (the new creation, "It is DONE", alpha and omega, etc.) then some other things came to memory, especially the line in the first movie when morpheus tells neo "you'll be more powerful than they can ever be" or something to that effect, in reference to the agents. what i'd say to the critics (and i have to people i work with that didn't get the ending) is that the ending was always hinted at. even though many references to other religions and religious concepts, the matrix is basically a christ allegory. anyway, these are just my thoughts on it.