GAH! I STILL can't stand the confusion in my mind!
Okey dokey people:
WHY wasn't Neo left in that crater at the end of Revo? We have seen from M1 and M2 that if you die in the real world, your RSI still remains in the matrix.
Now, we assume that the RSI's of everyone else {like the oracle} were still left after the smiths went kablamo - so where was neo? Why wasn't his RSI among the others?
RSI = Residual Self Image for newbies {if you don't know what THAT means than re-watch M1 😄 }