they didn't need to use the shot.... there could be tons of reasons why...
but mainly it would have been out of place... because the scene is focussing on wolverine looking at scotts shades... then it cuts to wolveys face as he hears Storm scream Logan... then it cuts to Wolverine running to where storm is, who is kneeling beside Jeans body... at the exact same position as the unused shot in the trailer is....