illadelph12
aka Rakim Illa
Apocalypse's full control of his atomic structure negates the effects of a majority of Storm's abilities, particularly temperature variance, and his ability to morph into different forms of machinery, like a giant semiconductor, for example, as well as his ability to absorb and redirect energy sources, even life force, as displayed when he absorbed Cyclops's optic blasts with an open palm, and then proceeded to extract Cyclops's own 'essence' with the same gesture, lends to the fact that using energy attacks against him, like lightning, even of great magitude, would be futile.
On the other hand, Storm still suffers from human frailty, even in her 'enhanced' form, and impalement, containment, suffocation, shooting, and crushing her are simple direct attacks Apoc could use without even delving into all of the other more exotic options he has. He could just grow really big, teleport above her, and propel himself downward to crush her into the ground. Or just crush her in the palm of his hand. There's no way for her to survive a physical engagement with him, and most of her arsenal would only prove to be an annoyance to him at best.