You can say that. He's become one witht he Matrix, and that includes the Machines.
There's only one human like him.
Now there's only one program like him and that's smith.
Also remember when Persaphone kissed him. She could be just saving that Data, until After Neo dies. Think about it. She said, Merovingian used to be like Neo, now look at their distraught relationship. So the scene looks like she's envious of Trinity, when in Fact she could be caring of her. Perhaps in the Future, trinity will be Like Persaphone.
Lonely.
So Persaphone may be saving that Neo Kiss until After Neo Dies. Perhaps sharing a lesbian Kiss with Trinity (LOL), Or Perhaps it will just be another program, where Trinity will get to see Neo one last Time, and that saved Kiss will be For Trinity.
Just Like Persaphone said about it not lasting forever.