Originally posted by Evil Dead
Zion's control room program that the controllers are jacked into controlling Zion's docks and gates is not connected to the Matrix.........it is just a program........just like the dojo program from the first movie, the agent training program with the lady in the red dress in the first movie, and just like Ghost's Garden program in the Enter the Matrix game where he fights Trinity on his personal processing unit........they are all programs............not part of the Matrix.
does anything else need to be said?.............................................................................................................................................no.