"Thanks, sir. I'll try and find out..." Harmony says, "But escape pods aren't light: we're going to need everyone to get one to the engine room, and then I'll need to get over there to pilot it." Harmony tries to use any hull-monitoring or airlock-monitoring equipment she can still access to determine what the object that struck them is. As a safety measure, she also magnetically seals the airlock blast doors, if they aren't already.
If that doesn't work, Harmony opens up a Cortex screen and prepares to send a wave. At the same time, she monitors the data stream going into and out of the ship, over the Cortex, looking for relay points; if she isn't locked out of the ship's radio receiver, she sets up a quick radar program to read any bounces from the wave that might make their way back to the ship.
Taking advantage of the fact that the cortex is currently locked out of positioning software, and therefore will be broadcasting in all directions, Harmony is planning to read any bounces- either data relays from a vessel with Cortex access, or just radio waves bouncing off the object and making their way back to the ship. Hopefully, she can find out what's out there...
Of course, if that doesn't work, then she grumbles a bit and gets back to work trying to reclaim the ship from the virus.