(Sadly this is harder to extrapolate to older stories, as they were rated out of 5.)
Gallifrey Base has released the average user ratings for all stories since The Waters of Mars (hence this really just covers Smith's era). The scores are out of 10:
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1. The Pandorica Opens - 9.020
2. The Doctor's Wife - 8.908
3. The Name of the Doctor - 8.750
4. The Time of Angels - 8.748
5. The Big Bang - 8.665
6. Flesh and Stone - 8.606
7. The Eleventh Hour - 8.378
8. The Angels Take Manhattan - 8.361
9. Vincent and the Doctor - 8.354
10. The Girl Who Waited - 8.339
11. The Impossible Astronaut - 8.322
12. The Waters of Mars - 8.316
13. Day of the Moon - 8.242
14. Asylum of the Daleks - 8.139
15. A Good Man Goes to War - 8.113
16. The End of Time, Part Two - 8.078
17. Amy's Choice - 8.057
18. The Snowmen - 7.958
19. The God Complex - 7.866
20. A Christmas Carol - 7.841
21. Hide - 7.813
22. The Almost People - 7.736
23. The Wedding of River Song - 7.693
24. Let's Kill Hitler - 7.684
25. The Lodger - 7.610
26. Cold War - 7.565
27. The Crimson Horror - 7.474
28. Cold Blood - 7.466
29. The Hungry Earth - 7.388
30. The Vampires of Venice - 7.376
31. The Beast Below - 7.288
32. Journey to the Centre of the TARDIS - 7.279
33. The Bells of Saint John - 7.259
34. The Rebel Flesh - 7.254
35. The End of Time, Part One - 7.160
36. The Power of Three - 7.134
37. A Town Called Mercy - 7.104
38. Closing Time - 7.090
39. Dinosaurs on a Spaceship - 6.947
40. Nightmare in Silver - 6.745
41. Night Terrors - 6.702
42. Victory of the Daleks - 6.429
43. The Doctor, the Widow and the Wardrobe - 6.345
44. The Curse of the Black Spot - 6.245
45. The Rings of Akhaten - 5.631
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Note how 'Rings' is a significant leap below the rest; it really was hated at GB. Hard to tell if it is actually lower rated than 'Fear Her' due to the change in scale.
This is just posting fans at GB, of course, and that's a very skewed sample even amongst fans (Doctor Who Magazine's poll for stories a few years back was a much more even handed affair). Anyway, in that context, note how arc stories, written by Moffat, dominate. Also note how Gaiman gets near the very top and very bottom at once.