Originally posted by Endless Mike
There's a major problem with that logic: Atoms don't compose reality, atoms simply exist within reality. Reality is made of spacetime, which is a substrate on which matter and energy exist. The ability to control all atoms in the universe doesn't mean the ability to destroy the universe. For an analogy, it would be like controlling all the water in a bucket, but not being able to destroy or rip apart the bucket itself.
This makes sense.
Which is why Reality Warpers will always be above Matter Manipulators.